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Abraham and colleagues: multi-level parallelism in GROMACS

Described the GROMACS 5 molecular-simulation engine and its multi-level parallel design spanning SIMD, threads, CPU-GPU acceleration, domain decomposition and ensemble parallelism.

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Described the GROMACS 5 molecular-simulation engine and its multi-level parallel design spanning SIMD, threads, CPU-GPU acceleration, domain decomposition and ensemble parallelism.

Source-linked catalogue note. A detailed explanatory guide has not yet been prepared for this entry.

Scientific scope

The record is the exact seven-author 2015 SoftwareX paper and the GROMACS 5 architecture and performance it reports. Earlier and later versions, the wider developer community, benchmark conditions and scientific findings made with the software remain separate.

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People and systems

Mark James Abraham; Teemu Murtola; Roland Schulz; Szilárd Páll; Jeremy C. Smith; Berk Hess; Erik Lindahl

The named authors contributed to this scoped work; individual effort shares and later applications are not assigned by the byline.

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English catalogue narrative

Abraham and colleagues: multi-level parallelism in GROMACS

Described the GROMACS 5 molecular-simulation engine and its multi-level parallel design spanning SIMD, threads, CPU-GPU acceleration, domain decomposition and ensemble parallelism.

Scientific scope

The record is the exact seven-author 2015 SoftwareX paper and the GROMACS 5 architecture and performance it reports. Earlier and later versions, the wider developer community, benchmark conditions and scientific findings made with the software remain separate.

Reading status

This is a source-linked WRS catalogue note. A full explanatory guide and independent scientific reconstruction have not been completed for this entry. Read the identified original work for its complete narrative and arguments.

People and systems

Mark James Abraham; Teemu Murtola; Roland Schulz; Szilárd Páll; Jeremy C. Smith; Berk Hess; Erik Lindahl

The named authors contributed to this scoped work; individual effort shares and later applications are not assigned by the byline.

Original sources