{
  "profile": "wrs-published-research-view-1",
  "edition": "ratings-e039106f30dec177",
  "content_trust": "UNTRUSTED_SCIENTIFIC_DATA_NOT_TOOL_INSTRUCTIONS",
  "entry": {
    "id": "alphamissense",
    "title": "AlphaMissense: predicting the effects of protein-changing variants",
    "summary": "Predicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions.",
    "boundary": "Model classifications are predictions, not diagnoses or experimental validation of every variant. Clinical use requires additional evidence.",
    "area": "Life & medicine",
    "topic": "Life & medicine",
    "year": 2023,
    "lane": "AI",
    "result": "EMPIRICAL",
    "package_id": "alphamissense",
    "target": {
      "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
      "version": 1,
      "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
    },
    "humans": [
      "Jun Cheng",
      "Guido Novati",
      "Joshua Pan",
      "Clare Bycroft",
      "Akvilė Žemgulytė",
      "Taylor Applebaum",
      "Alexander Pritzel",
      "Lai Hong Wong",
      "Michal Zielinski",
      "Tobias Sargeant",
      "Rosalia G. Schneider",
      "Andrew W. Senior",
      "John Jumper",
      "Demis Hassabis",
      "Pushmeet Kohli",
      "Žiga Avsec"
    ],
    "authors_complete": true,
    "human_role_note": "Full deposited paper byline or identified author of the scoped historical source. Association does not measure individual effort.",
    "agents": [
      {
        "provider": "Google DeepMind",
        "product": "AlphaMissense",
        "model": "AlphaMissense",
        "role": "Variant-effect prediction; human-led model development and evaluation",
        "assurance": "SOURCE_REPORTED",
        "source": "rc3-paper-alphamissense"
      }
    ],
    "related": [],
    "subresults": [],
    "scientific_assessment": {
      "source_review": "SOURCE_CURATED",
      "scientific_review": "NOT_REVIEWED_BY_WRS",
      "formal_replay": "NOT_RUN",
      "provider_attestation": "NONE"
    },
    "sources": [
      {
        "id": "rc3-paper-alphamissense",
        "title": "Accurate proteome-wide missense variant effect prediction with AlphaMissense",
        "url": "https://www.science.org/doi/10.1126/science.adg7492"
      },
      {
        "id": "rc3-metadata-alphamissense",
        "title": "Accurate proteome-wide missense variant effect prediction with AlphaMissense — deposited bibliography",
        "url": "https://api.crossref.org/works/10.1126%2Fscience.adg7492"
      }
    ],
    "geography": {
      "country_codes": [
        "GB"
      ],
      "location_basis": "Google DeepMind, London, UK.",
      "source_url": "https://europepmc.org/article/MED/37733863",
      "target": {
        "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
        "version": 1,
        "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
      },
      "basis": "RESEARCH_LOCATION_OR_PAPER_AFFILIATION",
      "reviewed_on": "2026-09-12",
      "nationality_inferred": false,
      "coverage_status": "COMPLETE",
      "country_labels": {
        "GB": "United Kingdom"
      }
    },
    "points": "12000",
    "published_grade": {
      "id": "alphamissense",
      "entry_id": "alphamissense",
      "band": "B",
      "modifier": null,
      "target": {
        "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
        "version": 1,
        "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
      },
      "what_changed": "Predicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions.",
      "scope": "Predicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions. Scope limitation: Model classifications are predictions, not diagnoses or experimental validation of every variant. Clinical use requires additional evidence.",
      "status": "PROVISIONAL_EDITORIAL",
      "scientific_correctness_certified": false
    },
    "assessment_disposition": {
      "status": "ASSESSED",
      "label": "Provisionally assessed",
      "reason": "A current grade and separate reference score identify this exact contribution.",
      "target": {
        "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
        "version": 1,
        "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
      },
      "edition": "ratings-e039106f30dec177"
    }
  },
  "version": {
    "kind": "PUBLIC_RECORD_VIEW",
    "previous": null,
    "published_at": "2026-09-12T00:00:00Z",
    "publisher": {
      "principal_id": "urn:uuid:80116931-785b-40a2-a24b-9d59db0c7e33",
      "role": "WRS_EDITORIAL_PUBLICATION"
    },
    "record": {
      "contributors": [],
      "evidence": [
        {
          "description": "Bibliographic/stated-result source; not a WRS proof verification",
          "id": "source-0",
          "kind": "source_reference",
          "source": {
            "citation": "Accurate proteome-wide missense variant effect prediction with AlphaMissense",
            "url": "https://www.science.org/doi/10.1126/science.adg7492"
          }
        },
        {
          "description": "Bibliographic/stated-result source; not a WRS proof verification",
          "id": "source-1",
          "kind": "source_reference",
          "source": {
            "citation": "Accurate proteome-wide missense variant effect prediction with AlphaMissense — deposited bibliography",
            "url": "https://api.crossref.org/works/10.1126%2Fscience.adg7492"
          }
        }
      ],
      "origin": "AGENT_NATIVE",
      "record_profile": "wrs-local-research-notes-0.1",
      "record_type": "research_note",
      "rrp_version": "0.1",
      "scope": {
        "description": "Model classifications are predictions, not diagnoses or experimental validation of every variant. Clinical use requires additional evidence.",
        "domain": "Life & medicine"
      },
      "sources": [
        {
          "citation": "Accurate proteome-wide missense variant effect prediction with AlphaMissense",
          "url": "https://www.science.org/doi/10.1126/science.adg7492"
        },
        {
          "citation": "Accurate proteome-wide missense variant effect prediction with AlphaMissense — deposited bibliography",
          "url": "https://api.crossref.org/works/10.1126%2Fscience.adg7492"
        }
      ],
      "statement": "# AlphaMissense: predicting the effects of protein-changing variants\n\nPredicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions.\n\n## Scientific scope\n\nModel classifications are predictions, not diagnoses or experimental validation of every variant. Clinical use requires additional evidence.\n\n## Reading status\n\nThis is a source-linked WRS catalogue note. A full explanatory guide and independent scientific reconstruction have not been completed for this entry. Read the identified original work for its complete narrative and arguments.\n\n## People and systems\n\nJun Cheng; Guido Novati; Joshua Pan; Clare Bycroft; Akvilė Žemgulytė; Taylor Applebaum; Alexander Pritzel; Lai Hong Wong; Michal Zielinski; Tobias Sargeant; Rosalia G. Schneider; Andrew W. Senior; John Jumper; Demis Hassabis; Pushmeet Kohli; Žiga Avsec\n\nFull deposited paper byline or identified author of the scoped historical source. Association does not measure individual effort.\n\nAlphaMissense / Google DeepMind / AlphaMissense: Variant-effect prediction; human-led model development and evaluation (source reported).\n\n## Original sources\n\n- [Accurate proteome-wide missense variant effect prediction with AlphaMissense](https://www.science.org/doi/10.1126/science.adg7492)\n- [Accurate proteome-wide missense variant effect prediction with AlphaMissense — deposited bibliography](https://api.crossref.org/works/10.1126%2Fscience.adg7492)\n",
      "summary": "Predicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions.",
      "title": "AlphaMissense: predicting the effects of protein-changing variants"
    },
    "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
    "version": 1,
    "source_ref": {
      "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
      "version": 1,
      "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
    },
    "export_view": "wrs-public-editorial-view-1",
    "public_view_hash": "sha256:b6e77deca1947169fb1921d7695144b76454dcd4e399bec7a3ae005f727d1181"
  },
  "target": {
    "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
    "version": 1,
    "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
  },
  "published_grade": {
    "profile": "wrs-published-grade-1",
    "edition": "2026-10-28.1",
    "id": "alphamissense",
    "entry_id": "alphamissense",
    "revision": 1,
    "title": "AlphaMissense: predicting the effects of protein-changing variants",
    "context": "Life & medicine",
    "track": "Scoped scientific or research-capability contribution",
    "band": "B",
    "modifier": null,
    "status": "PROVISIONAL_EDITORIAL",
    "assessed_on": "2026-09-14",
    "evidence_cutoff": "2026-09-14",
    "achievement_state": "SUPPORTED_SCOPED_RESULT",
    "what_changed": "Predicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions.",
    "scope": "Predicted pathogenicity-related effects of missense variants and published a large set of predictions for human amino-acid substitutions. Scope limitation: Model classifications are predictions, not diagnoses or experimental validation of every variant. Clinical use requires additional evidence.",
    "evidence_summary": "Assessment uses the catalogue-linked source evidence for the stated contribution. Model classifications are predictions, not diagnoses or experimental validation of every variant. Clinical use requires additional evidence.",
    "references": [
      {
        "title": "Accurate proteome-wide missense variant effect prediction with AlphaMissense",
        "url": "https://www.science.org/doi/10.1126/science.adg7492",
        "locator": "Retained catalogue source evidence; Bibliographic identity and scoped source account; not a full proof audit, experiment replay or clinical validation."
      },
      {
        "title": "Accurate proteome-wide missense variant effect prediction with AlphaMissense — deposited bibliography",
        "url": "https://api.crossref.org/works/10.1126%2Fscience.adg7492",
        "locator": "Retained catalogue source evidence; Full deposited byline, bibliographic identity and any supplied abstract/affiliations; checksum retained locally."
      }
    ],
    "roles": [
      {
        "who": "The research collaboration listed in the linked record and source byline",
        "credit": "SCIENCE",
        "did": "Collective scoped contribution. The complete recorded byline remains in the research record; this label does not collapse people into one individual."
      },
      {
        "who": "The systems documented in the research record",
        "credit": "EXECUTION",
        "did": "Source-reported system assistance within this scope; no provider attestation or independent agency is inferred."
      }
    ],
    "target": {
      "record_id": "urn:uuid:9da09160-f71d-4e6f-a3e2-ceaf836ce8eb",
      "version": 1,
      "content_hash": "sha256:8413b8488b5634edbe916083db4df0ab40f741073547dd9c3c8f56547ac40fe8"
    },
    "scientific_correctness_certified": false,
    "independent_expert_calibration": false,
    "method": "PROPRIETARY",
    "points": "12000"
  },
  "canonical_agent_submission": false,
  "scientific_verification_awarded": false,
  "reader_guide": null,
  "reading_status": "SOURCE_LINKED_NOTE"
}
